BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB011F12LP1|AL426253
(746 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1196 1439 0.0
>3x_Contig1196
Length = 5660
Score = 1439 bits (722), Expect = 0.0
Identities = 737/746 (98%)
Strand = Plus / Plus
Query: 1 aataatctttgacttcacgatttttgcmacaccgcttttcaaggaaacttttataaagac 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1613 aataatctttgacttcacgatttttgcaacaccgcttttcaaggaaacttttatcaagac 1672
Query: 61 aacgcccgttccctttgccaaagtggcagcgattatgacattgtcctggtcgataaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 aacgcccgttccctttgccaaagtggcagcgattatgacattgtcctggtcgataaatct 1732
Query: 121 gatctttgacattttccaattagaatcaaagtcggtcttacgaacgatgaaattcccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 gatctttgacattttccaattagaatcaaagtcggtcttacgaacgatgaaattcccagt 1792
Query: 181 aacgacagacataacttccaaagtagacgcagtaatataactcaagactttcccatctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 aacgacagacataacttccaaagtagacgcagtaatataactcaagactttcccatctgg 1852
Query: 241 agaaaaatgcagatctttgacgtcgttacctgtttctacctcgtaagtctctcgtaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 agaaaaatgcagatctttgacgtcgttacctgtttctacctcgtaagtctctcgtaagtt 1912
Query: 301 tgttgggttcacaatacaaatcacagtaggaacctttgaggaggcaatggccgctacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 tgttgggttcacaatacaaatcacagtaggaacctttgaggaggcaatggccgctacaga 1972
Query: 361 tgcatctggagataaatatgtcaatttggtatactcttctggcttacttgatccatccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 tgcatctggagataaatatgtcaatttggtatactcttctggcttacttgatccatccaa 2032
Query: 421 atcaatgctagcmacaaacttcaaatgttcattatggaacacgtatttccttaaatggtt 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 atcaatgctagcaacaaacttcaaatgttcattatggaacacgtatttccttaaatggtt 2092
Query: 481 gttaccctttccagatttgatcttctctgatccttcattacaacctatcarvatracgtt 540
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 2093 gttaccctttccagatttgatcttctctgatccttcattacaacctatcaaaataacgtt 2152
Query: 541 attggcataatccaaagtcgttggagaatcatcgttatcgtccaaacttagctctctgar 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 attggcataatccaaagtcgttggagaatcatcgttatcgtccaaacttagctctctgaa 2212
Query: 601 tcgtttcacaattttcttcttctgggagtcgactttcaaagcagaaatcttatttgggat 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 2213 tcgtttcacaattttcttcttctggaagtcgactttcaaagcagaaatcttatttggaat 2272
Query: 661 accattattaccttctccaccacccccagcaactaaaagtgtggaattgtccagaaactt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 accattattaccttctccaccacccccagcaactaaaagtgtggaattgtccagaaactt 2332
Query: 721 ggccccataaacaggatacccaatgt 746
||||||||||||||||||||||||||
Sbjct: 2333 ggccccataaacaggatacccaatgt 2358
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5668
Number of Sequences: 1807
Number of extensions: 5668
Number of successful extensions: 139
Number of sequences better than 1.0e-20: 1
length of query: 746
length of database: 10,358,551
effective HSP length: 16
effective length of query: 730
effective length of database: 10,329,639
effective search space: 7540636470
effective search space used: 7540636470
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)